Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs11985783 chr8:143441623 A/G 0.000125 486 30.3 30.8 31.87 KM Plot
PRAD rs11986464 chr8:143441347 T/C 0.000125 486 30.3 30.8 31.87 KM Plot
PRAD rs12027013 chr1:31851580 G/A 7.97E-6 493 30.97 31.28 22.87 KM Plot
PRAD rs12027142 chr1:93728648 G/C 3.79E-6 492 31.3 28.13 18.97 KM Plot
PRAD rs12027502 chr1:31802524 G/A 8.04E-6 494 30.97 31.27 22.87 KM Plot
PRAD rs12033147 chr1:93792912 C/G 3.59E-6 494 31.37 26.8 18.97 KM Plot
PRAD rs12036057 chr1:93809051 T/C 3.62E-6 494 31.3 28.13 18.97 KM Plot
PRAD rs12038046 chr1:93687526 T/G 1.19E-8 491 31.3 28.13 9.17 KM Plot
PRAD rs12041462 chr1:6578450 G/A 8.66E-5 477 29.2 33.53 18.43 KM Plot
PRAD rs12045001 chr1:93775406 T/A 3.62E-6 494 31.3 28.13 18.97 KM Plot
PRAD rs12046063 chr1:93722562 A/G 3.62E-6 493 31.37 27.47 18.97 KM Plot
PRAD rs12046229 chr1:6580397 C/T 5.79E-5 485 29.2 33.95 18.43 KM Plot
PRAD rs12057691 chr1:16326525 G/A 2.42E-5 493 31.9 26.03 67.52 KM Plot
PRAD rs12057768 chr1:16326701 G/A 2.35E-5 494 31.93 26.03 67.52 KM Plot
PRAD rs12057806 chr1:16326789 G/A 2.29E-5 494 31.38 27.13 67.52 KM Plot